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national centre for biotechnology information (ncbi) nonredundant (nr) and transcriptome shotgun assembly (tsa) databases  (Biotechnology Information)

 
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    Biotechnology Information national centre for biotechnology information (ncbi) nonredundant (nr) and transcriptome shotgun assembly (tsa) databases
    National Centre For Biotechnology Information (Ncbi) Nonredundant (Nr) And Transcriptome Shotgun Assembly (Tsa) Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    national centre for biotechnology information (ncbi) nonredundant (nr) and transcriptome shotgun assembly (tsa) databases  (Biotechnology Information)
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    Biotechnology Information national centre for biotechnology information (ncbi) nonredundant (nr) and transcriptome shotgun assembly (tsa) databases
    National Centre For Biotechnology Information (Ncbi) Nonredundant (Nr) And Transcriptome Shotgun Assembly (Tsa) Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Novel Tetronarce viruses and Matonaviridae referenced in this study.
    Ncbi Transcriptome Shotgun Assembly (Tsa) Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Biotechnology Information ncbi transcriptome shotgun assembly tsa database
    ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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    ncbi transcriptome shotgun assembly (tsa-nr) database  (Biotechnology Information)
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    ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
    Ncbi Transcriptome Shotgun Assembly (Tsa Nr) Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ncbi’s transcriptome shotgun assembly sequence database (tsa)  (Biotechnology Information)
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    ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
    Ncbi’s Transcriptome Shotgun Assembly Sequence Database (Tsa), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ncbi non-redundant (nr) and transcriptome shotgun assembly (tsa-nr) databases  (Biotechnology Information)
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    Biotechnology Information ncbi non-redundant (nr) and transcriptome shotgun assembly (tsa-nr) databases
    ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
    Ncbi Non Redundant (Nr) And Transcriptome Shotgun Assembly (Tsa Nr) Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Novel Tetronarce viruses and Matonaviridae referenced in this study.

    Journal: Viruses

    Article Title: A Novel Rubi-Like Virus in the Pacific Electric Ray ( Tetronarce californica ) Reveals the Complex Evolutionary History of the Matonaviridae

    doi: 10.3390/v13040585

    Figure Lengend Snippet: Novel Tetronarce viruses and Matonaviridae referenced in this study.

    Article Snippet: Here, we performed data mining of metagenomic data to determine if related matonaviruses were present in other vertebrate taxa, screening the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly (TSA) database against the genome sequences of Rubella , Ruhugu , and Rustrela viruses .

    Techniques: Sequencing, Virus

    ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo transcriptome (NCBI Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).

    Journal: eLife

    Article Title: Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants

    doi: 10.7554/eLife.64250

    Figure Lengend Snippet: ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo transcriptome (NCBI Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).

    Article Snippet: Our de novo Venus flytrap trap transcriptome is available through the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly (TSA) database with accession number GHJF00000000.

    Techniques: Sequencing